Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs6498158 chr16:8711731 C/T 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs6498170 chr16:8712576 A/G 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs6498171 chr16:8712663 A/G 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs6498172 chr16:8712699 G/A 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs6498174 chr16:8712983 G/A 4.94E-9 501 8.17 17.75 23.98 KM Plot
LGG rs6498208 chr16:8716041 G/T 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs6498214 chr16:8716107 A/C 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs6498221 chr16:8716498 A/G 5.6E-9 502 7.88 18.07 24.03 KM Plot
LGG rs6573469 chr14:24419422 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6573470 chr14:24419512 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6573471 chr14:24419616 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6573472 chr14:24419672 G/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6573473 chr14:24419756 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6573474 chr14:24419839 C/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs6573484 chr14:24428285 A/G 3.34E-5 503 23.58 21.15 15.53 KM Plot